PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g080860.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 254aa    MW: 28345.9 Da    PI: 6.8886
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g080860.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-334396255
             G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Sopim02g080860.0.1 43 PRLRWTHDLHRCFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 96
                        8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.7553999IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-323998IPR009057Homeodomain-like
SuperFamilySSF466899.85E-164197IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-254397IPR006447Myb domain, plants
PfamPF002492.7E-74495IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMNELHPFSD NSPSNLSMKQ PIMLENTNNN KSGVRPYVRS KMPRLRWTHD LHRCFVHAVE  60
RLGGEDRATP KMVLQLMDVK GLTISHVKSH LQMYRSMKHE QLMQAVAEAA NGSKSNKMDG  120
PDQVHYPHGN FLHHYYNGHP NSTITSTYSD HIASTPAFIP PAPWRPMPKK MMGLEGRLDP  180
ACNMFRDFFN GCTTVQDGSV GDQYGSSLSN KHFSIIDTEE EAEDSGSITM FAQPSAGLED  240
VNNNNISLDL TLG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-107HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233787.10.0PREDICTED: uncharacterized protein LOC101255761 isoform X1
TrEMBLK4B9V60.0K4B9V6_SOLLC; Uncharacterized protein
STRINGSolyc02g080860.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74502029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-34G2-like family protein